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Put It on the Board, 12/17

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FDA announces IMPACT authorization and path for authorization of other tumor profiling tests

FoundationOne CDx approved with proposed coverage

FDA clears Ventana MMR IHC Panel for CRC

SeraCare issues NGS reference material for hematologic malignancies

Sysmex offers two new hematology systems

FDA approves Ventana ALK (D5F3) CDx assay

Study: Fewer biopsies for men tested with phi

ArcherDx, Celgene sign CDx agreement

FDA announces IMPACT authorization and path for authorization of other tumor profiling tests

The FDA on Nov. 15 authorized Memorial Sloan Kettering Cancer Center’s IMPACT (Integrated Mutation Profiling of Actionable Cancer Targets) tumor profiling test. The IMPACT test uses next-generation sequencing to identify the presence of mutations in 468 unique genes, as well as other molecular changes in the genomic makeup of a tumor.

The FDA’s action set forth a policy framework that paves the way for the efficient review and availability of other NGS-based cancer profiling tools. The FDA also announced the recent accreditation of the New York State Department of Health as an FDA third-party reviewer of in vitro diagnostics, including tests similar to the IMPACT test. Moving forward, laboratories whose NGS-based tumor profiling tests have been approved by NYSDOH do not need to submit a separate 510(k) application to the FDA. Instead, developers may choose to request that their NYSDOH application, as well as the state’s review memorandum and recommendation, be forwarded to the FDA for possible 510(k) clearance. Other accredited third-party FDA reviewers also may become eligible to conduct such reviews and make clearance recommendations to the agency.

“The goal of allowing NGS-based tumor profiling tests to undergo review by accredited third parties is to reduce the burden on test developers and streamline the regulatory assessment of these types of innovative products. As this field advances, we are modernizing the FDA’s approach to the efficient authorization of laboratory tests from developers that voluntarily seek 510(k) clearance,” FDA commissioner Scott Gottlieb, MD, said in a statement.

The IMPACT test was reviewed by the FDA through the de novo premarket review pathway. Results indicated the assay is highly accurate (greater than 99 percent) and capable of detecting a mutation at a frequency of about five percent (range of two to five percent). Detection of certain molecular changes (microsatellite instability) using the IMPACT test was concordant more than 92 percent of the time across multiple cancer types in 175 cases, when compared with traditional methods of detection, according to an FDA statement.

Along with this authorization, the FDA is establishing a class II regulatory pathway for the review of other NGS-based tumor profiling tests for use in patients diagnosed with cancer. Class II designation allows these types of tests to be eligible to use the FDA’s 510(k) clearance process, either by submitting the application to the FDA directly or through an accredited third-party reviewer such as the New York State Department of Health.

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FoundationOne CDx approved with proposed coverage

The FDA approved the FoundationOne CDx (F1CDx), the first breakthrough-designated, next-generation-sequencing-based IVD test that can detect genetic mutations in 324 genes and two genomic signatures in any solid tumor type. The Centers for Medicare and Medicaid Services at the same time proposed coverage of the F1CDx.

“The FDA’s Breakthrough Device Program and Parallel Review with CMS allowed the sponsor to win approval for this novel diagnostic and secure an immediate proposed Medicare coverage determination within six months of the FDA receiving the product application,” FDA commissioner Scott Gottlieb, MD, said in a statement.

Jeffrey Shuren, MD, director of the FDA’s Center for Devices and Radiological Health, said in the statement, “With the run of one test, patients and health care professionals can now evaluate several appropriate disease management options.”

The CMS issued a proposed national coverage determination of the F1CDx and other similar NGS IVDs for Medicare beneficiaries with advanced cancer (i.e., recurrent, metastatic, or advanced stage IV cancer) who have not been previously tested using the same NGS technology and continue to seek further cancer therapy.

This determination was made under the FDA-CMS Parallel Review Program, in which the agencies concurrently review medical devices to help reduce the time between the FDA’s approval of a device and Medicare coverage. This voluntary program is open to certain premarket approval applications for devices with new technologies and to medical devices that fall within the scope of a part A or part B Medicare-benefit category and have not been subject to a national coverage determination.

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FDA clears Ventana MMR IHC Panel for CRC

Roche announced in November FDA clearance of the Ventana MMR IHC Panel for patients diagnosed with colorectal cancer. The tests detect proteins associated with a DNA mismatch repair and aid in differentiating between sporadic CRC and probable Lynch syndrome.

The panel of five assays includes four that target MMR proteins MLH1, MSH2, MSH6, and PMS2, as well as the Ventana BRAF V600E (VE1) assay. It is the first test to be granted a de novo class II designation from the FDA for MMR testing.

The panel consists of Ventana anti-MLH1 (M1), Ventana anti-PMS2 (A16-4), Ventana anti-MSH2 (G219-1129), Ventana anti-MSH6 (SP93) antibodies, for patients diagnosed with colorectal cancers for the detection of MMR protein deficiency as an aid in identifying probable Lynch syndrome, and Ventana BRAF V600E (VE1) antibody as an aid in differentiating between sporadic CRC and probable Lynch.

The ready-to-use panel is optimized for use with the OptiView DAB IHC detection kit, OptiView amplification kit, and ancillaries on the fully automated BenchMark Ultra system.

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SeraCare issues NGS reference material for hematologic malignancies

SeraCare Life Sciences has launched its Seraseq Myeloid DNA and Myeloid RNA fusion reference materials, the first set of comprehensive myeloid cancer NGS reference materials. These materials include a wide range of mutation types, from simple but clinically important SNVs to gene fusions. To maximize compatibility with existing and emerging myeloid assays, the new products contain 23 DNA mutations (including FLT3 ITDs and NPM1) along with nine fusion RNAs (including BCR-ABL and PML-RARA). Variants are present against a single well-characterized genomic background (GM24385) at clinically relevant allele frequencies that are precisely quantified using highly sensitive digital PCR assays.

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