Webinars and Sponsored Roundtables — Register Now

Tuesday, July 21, 2026, 11:00-11:30 AM CT

Learning Objectives:
  • Explain how transparency and manufacturer partnerships improve quality, consistency, and decision-making confidence in specimen management.
  • Evaluate blood collection tubes beyond cost and commodity assumptions, incorporating clinical impact and risk into decision-making.
  • Assess the potential risk points when using a blood collection device that has not been cleared for a specific purpose.

Roundtable presenters Nick Fingland, PhD, PMP, Senior Director, R&D Operations and Science, BD, and Chris Farnsworth, PhD, D(ABCC), Section Head of Clinical Chemistry, Professor of Pathology and Immunology, Washington University School of Medicine.

Moderated by: Bob McGonnagle, Publisher, CAP TODAY

Wednesday, July 29, 2026, 1:00-2:00 PM ET
Learn about digital pathology technology that is future-ready, yet practical for today’s
laboratory needs.

Webinar presenters Scott Hammond, Senior Systems Consultant, Digital Pathology Division, Wexner Medical Center, Department of Pathology, and Ursula Hofer, Imaging Technologist, Pathology Digital Imaging Lab, Wexner Medical Center, Department of Pathology, and Sandra Banky, PA(ASCP), Director of Operations, Wexner Medical Center, Department of Pathology.

Moderated by: Bob McGonnagle, Publisher, CAP TODAY

Subspecialties

Interactive Product Guides

Product Spotlight

Illumina

NextSeq 1000; NextSeq 2000

Company

Illumina

Name of system

NextSeq 1000; NextSeq 2000

Email

info@illumina.com

City, State

San Diego, CA

Phone

858-202-4500  

Website

http://www.illumina.com

System application/FDA cleared or approved

research use/not required

Country where designed/Manufactured

U.S./Singapore

First year sold in U.S./First year installed in U.S.

2020/2020

System sold internationally

yes (worldwide)

Dimensions of sequencer (H × W × D)/Footprint of sequencer

23.6 × 23.6 × 25.6 in./3.9 sq. ft.

Accessory equipment supplied with sequencer at no cost

keyboard

Type of computer supplied with sequencer

computer for analysis and operations combined

Analysis options provided with sequencer

onboard, cloud based, on-premises server

Where library preparation is performed

wet bench

Bioinformatics tools provided with sequencer

DRAGEN Bio-IT, BaseSpace Sequence Hub

Sequencer supplied with UPS (uninterruptible power supply)

yes (no extra charge)

Electrical connection required for sequencer

100–240 VAC at 50/60 Hz

List price of entire sequencer and necessary components

NextSeq 1000: $210,000; NextSeq 2000: $335,000

Purchase options

purchase, lease, reagent rental

Warranties offered

first year included with purchase; extended warranty available

Training included/Total time for basic training per operator

yes/1–2 days

Training location/Follow-up training available

at customer site/yes (extra charge)

Maximum No. of samples amplified in a single amplification event

384 samples (>384 samples with custom barcodes)

Read length/Percent bases >Q30

up to 2 × 300 bp/85–90%

Paired-end capability/Tag lengths/Spans

yes/2 × 300 bp/—

Fragment/Tag lengths/Spans

yes/2 × 300 bp/—

Mate pair/Tag lengths/Spans

yes/2 × 300 bp/—

Single end/Tag lengths/Spans

yes/2 × 300 bp/—

RNA sequencing/Tag lengths/Spans

yes/2 × 300 bp/—

ChIP sequencing/Tag lengths/Spans

yes/2 × 300 bp/—

Bisulfite sequencing/Tag lengths/Spans

yes/2 × 300 bp/—

Maximum No. of reads or fragments sequenced per single-end run

up to 400 M (NextSeq 1000); up to 1.8 B (NextSeq 2000)

Maximum No. of reads or fragments sequenced per paired-end run

up to 800 M (NextSeq 1000); up to 3.6 B (NextSeq 2000)

Total No. of nucleotides (bases) sequenced per run

up to 240 Gb (NextSeq 1000); up to 540 Gb (NextSeq 2000)

Wet lab bench time for sequencing preparation

10 minutes

Sequencing run time

8–42 hours (NextSeq 1000); 8–44 hours (NextSeq 2000)

Total time for generating standard gDNA library

<3.5 hours (with Illumina DNA Prep)

• Paired end

<3.5 hours (with Illumina DNA Prep)

• Fragment

<7 hours (with AmpliSeq for Illumina); <6.5 hours (with Illumina DNA Prep with Enrichment)

• Mate pair

• Single end

<1 day (with TruSeq Small RNA)

• RNA sequencing

<9 hours

• Bisulfite sequencing

• Hands-on time for paired end

<1.5 hours (with Illumina DNA Prep)

• Hands-on time for fragment

<1.5 hours (with AmpliSeq for Illumina); <2 hours (with Illumina DNA Prep with Enrichment)

• Hands-on time for mate pair

• Hands-on time for single end

<4 hours (with TruSeq Small RNA)

• Hands-on time for RNA sequencing

<3 hours

• Hands-on time for ChIP sequencing

• Hands-on time for bisulfite sequencing

Library preparation integrated in system as standard offering

no

Cost of sequencing reagents per run

$720–$2,963 (NextSeq 1000); $720–$4,860 (NextSeq 2000)

Reagent tracking method

RFID

• Type of reagent information tracked

serial No., expiration date, lot and part Nos., No. of cycles

Shipping conditions for amplification/sequencing reagents

dry ice, gel pack, ambient (variable based on product)/dry ice, gel pack, ambient (variable based on product)

Storage conditions for amplification/sequencing reagents

reagent cartridge: -15°– -25°C; flow cell and resuspension buffer tube: 2°–8°C/reagent cartridge: -15°– -25°C; flow cell and resuspension buffer tube: 2°–8°C

Shelf life of amplification/sequencing reagents

guaranteed 6 months/guaranteed 6 months

System requires a control sample on sequencing run 

no

• Company offers a sequencing control

yes (additional charge)

Sequencing system control software and devices to start run/for data analysis

NextSeq Control Software, BaseSpace Sequence Hub/DRAGEN

Complete walkaway automation for amplification, sequencing, and variant calling

yes

Remote system monitoring

yes

Total time required for setup of amplification, sequencing, and variant calling steps

~15 hours

Maximum No. of libraries sequenced in a single run

384 samples (>384 samples with custom barcodes)

System includes secondary data-analysis software developed by company

yes (DRAGEN, BaseSpace Sequence Hub)

System includes post-sequencing data-analysis software

yes (DRAGEN, BaseSpace Sequence Hub)

Mutations detectable via data-analysis software

substitutions, indels, copy number changes

System can generate a variant report

yes

Types of maintenance plans available/mean time between failures

parts only, bronze, silver, gold, dedicated on-site/—

No. of field application scientists and engineers based in U.S.

>500

• Weekly maintenance required

none

• Monthly maintenance required

none

• Pre-run maintenance required

none

Distinguishing features of NGS system (supplied by company)

offers flexibility of multiple flow-cell configurations across different outputs and read lengths up to 2 × 300 bp for choice of cost-efficient configurations; integrated reagent cartridge design eliminates need for maintenance wash between runs; DRAGEN onboard allows the user to seamlessly integrate sequencing and analysis in run setup

More products
in this guide

MiSeq i100 Plus
NextSeq 550Dx
NovaSeq 6000Dx
NovaSeq X; NovaSeq X Plus
Ion GeneStudio S5 System
Ion Torrent Genexus Integrated Sequencer; Ion Torrent Genexus Dx Integrated Sequencer